PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P16280_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HD-ZIP
Protein Properties Length: 220aa    MW: 25338.8 Da    PI: 4.6052
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P16280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.4e-202778556
                           SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           ++f++eq++ Le+ Fe + ++ a+++++LA++lgL+ rqV +WFqN+Ra++k
  GSMUA_Achr1P16280_001 27 RRFSEEQIRSLESTFEAQTKLEARQKQQLARELGLQPRQVGIWFQNKRARWK 78
                           38*************************************************9 PP

2HD-ZIP_I/II111.17.2e-3625113290
            HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                            + rr+s+eq+++LE++Fe+++kLe ++K++lareLglqprqv +WFqn+RAR+k+kql+++y+aL++ ydal ++ ++L+ke++ L +
  GSMUA_Achr1P16280_001  25 RTRRFSEEQIRSLESTFEAQTKLEARQKQQLARELGLQPRQVGIWFQNKRARWKSKQLDREYRALRADYDALLSRFDSLNKEKQLLLK 112
                            789********************************************************************************99876 PP

            HD-ZIP_I/II  90 e 90 
                            +
  GSMUA_Achr1P16280_001 113 Q 113
                            5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-191180IPR009057Homeodomain-like
SuperFamilySSF466891.54E-181882IPR009057Homeodomain-like
PROSITE profilePS5007117.2652080IPR001356Homeobox domain
SMARTSM003892.2E-172184IPR001356Homeobox domain
CDDcd000863.05E-142581No hitNo description
PfamPF000462.2E-172778IPR001356Homeobox domain
PRINTSPR000315.5E-65160IPR000047Helix-turn-helix motif
PRINTSPR000315.5E-66076IPR000047Helix-turn-helix motif
PfamPF021831.4E-1380121IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGESEERCGG EEEEECCSKS SKGDRTRRFS EEQIRSLEST FEAQTKLEAR QKQQLARELG  60
LQPRQVGIWF QNKRARWKSK QLDREYRALR ADYDALLSRF DSLNKEKQLL LKQRQGLTEL  120
LDKTEKNDRD AASKEKEWPR PSLKEEPDLE FAGCTEEEED DDDNTLSYLC EDEPGPRAVQ  180
PATSSVPSSA EKQLHSATGR AAAQTSCSNS PWWEFWPLSE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00650PBMTransfer from LOC_Os09g35910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399995.11e-158PREDICTED: homeobox-leucine zipper protein HOX6-like
SwissprotQ651Z51e-43HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
SwissprotQ9XH351e-43HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBLM0S0D61e-158M0S0D6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P16280_0011e-157(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78733448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.14e-39homeobox 7